Atr-MIR171b

Basic info.

• miRNA locus ID
• Atr-MIR171b

• miRNA locus accession
• PmiREN000215

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00060  3430300  3430420  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

     AAGG  A  C    C C   C                    TG       CC    TAG
         GG CT GGTT G GTG GGTGTTGGCACGGTTCAATC  ACTGCTG  CTGC   
         || || |||| | ||| ||||||||||||||||||||  |||||||  ||||   T
         CC GA CTAA C CAC CTATAACCGTGCCGAGTTAG  TGGTGGT  GACG   
ACTAAGCTA  -  -    - T   A                    CG       AT    TGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]