Atr-MIR319a

Basic info.

• miRNA locus ID
• Atr-MIR319a

• miRNA locus accession
• PmiREN000223

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00077  2616695  2616910  +

• Comments
• A member of family MIR319

• Confidence level
• 

Secondary strurture and sequence

  AAAAT     CTTGC                      CCT     -T   GTCT      C   --      G   AC        TCAAA   TT      A   CCGTG
       TGGGA     GGAGGGAGCTCTCTTTAGTCCA   ATGGT  GGT    AGGGGT GAA  TTATCT CCG  TCATTCAT     TAA  GGTAGA AGG     
       |||||     ||||||||||||||||||||||   |||||  |||    |||||| |||  |||||| |||  ||||||||     |||  |||||| |||      
       ACTCT     TCTCCCTCGAGGGAAGTCAGGT   TACCA  CCG    TTCCCA CTT  AATAGA GGC  AGTAAGTG     ATT  TCATCT TCT     
ACTCTCT     CTCTC                      TCT     CT   ----      -   TA      G   GT        TTTAA   TC      C   TTTTA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]