Atr-MIR319c

Basic info.

• miRNA locus ID
• Atr-MIR319c

• miRNA locus accession
• PmiREN000225

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00105  1160443  1160654  +

• Comments
• A member of family MIR319

• Confidence level
• 

Secondary strurture and sequence

  TTGTGGGGTTTG      A                   TC     T  CAGT       A  GCT   G   G  C     C      T       A     GTTT
              GGGGGA GGAGCTCTCTTCAGTCCAG  TAGGA GG    TCGATCG AT   GCT CCG GT CTTCT TTATAA GCCTTTG TTTTT    
              |||||| |||||||||||||||||||  ||||| ||    ||||||| ||   ||| ||| || ||||| |||||| ||||||| |||||     
              TCTTCT CCTCGAGGGAAGTCAGGTT  GTTCT CC    AGTTGGT TA   CGA GGC CA GAAGA AGTGTT CGGAAGC AAGGA    
AACTTCCTCCTCTT      C                   CC     T  --CC       C  AGT   G   G  T     T      T       A     AAAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]