Atr-MIR393b

Basic info.

• miRNA locus ID
• Atr-MIR393b

• miRNA locus accession
• PmiREN000234

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00029  3201470  3201641  +

• Comments
• A member of family MIR393

• Confidence level
• 

Secondary strurture and sequence

  CCTCTGAGACGGGATGAAGCA                T        ATGAGAGAGAGA    CCAGTACAGAGTTTTAGAGAGAGAAAGGG
                       TCCAAAGGGATCGCAT GATCCGTC            GAGA                             
                       |||||||||||||||| ||||||||            ||||                             A
                       AGGTTTCCCTAGCGTA CTAGGTAG            TTAG                             
CTCACCTCGGTCTCCTCCTCCAT                -        ------------    AAAGCTGAGAGTGAGAGATTTGACCATAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]