Atr-MIR396f

Basic info.

• miRNA locus ID
• Atr-MIR396f

• miRNA locus accession
• PmiREN000238

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00013  1778378  1778512  -

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

GATTTGA   --------    -   C     A    GT         A  C       ACCC T     T    G
       TGT        GTTC ATG TTTCC CAGG  TTCTTGAAC TG TGCTCGA    G CTTCT CCAT 
       |||        |||| ||| ||||| ||||  ||||||||| || |||||||    | ||||| |||| C
       GCA        TAAG TAC AAAGG GTCC  AAGAATTTG AC ATGAGTT    C GAAGA GGTA 
          ATACTAAG    A   T     C    GT         A  A       GAAA -     -    T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]