Atr-MIR396b

Basic info.

• miRNA locus ID
• Atr-MIR396b

• miRNA locus accession
• PmiREN000239

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00014  2855204  2855340  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

  TTTTGGAATCCA    A                    A    A  ---A    GAGAAGATTG      C TA
              TCGT TTTTTCCACAGCTTTCTTGA CTTT TT    ATAT          CCGCTT G  
              |||| |||||||||||||||||||| |||| ||    ||||          |||||| |  A
              AGTA AAAAGGGTGTCGAAAGAACT GAAA AG    TATA          GGCGAA C  
ATTGGTCTTATGTA    C                    C    A  AAGG    ---------A      A GT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]