Atr-MIR396c

Basic info.

• miRNA locus ID
• Atr-MIR396c

• miRNA locus accession
• PmiREN000240

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00046  1545684  1545791  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

TTG    -    ----      C                         TTAGT  TTG
   GAAG TCCT    GTCATG TTTTCCACAGCTTTCTTGAACTTCT     CC   
   |||| ||||    |||||| |||||||||||||||||||||||||     ||    
   TTTT AGGA    CGGTAC AAAGGGTGTTGAAGGAACTTGAAGA     GG   
       T    ATAA      C                         TCTAC  TAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]