Atr-MIR396i

Basic info.

• miRNA locus ID
• Atr-MIR396i

• miRNA locus accession
• PmiREN000245

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00244  76223  76364  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

  ATAATTAAAGTAAAACAC       A  C          A  G   A   A  GGCC   T  G      TT
                    TTTTCAC GG TTTCTTGAAC TG TAC TAG CA    CAC TC TCGAGG  
                    ||||||| || |||||||||| || ||| ||| ||    ||| || ||||||  G
                    AGAGGTG CC AAAGAACTTG AC ATG GTC GT    GTG AG AGCTCT  
TAATGCTAACAAAGGTACAA       -  T          G  A   A   -  ---A   T  A      CG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]