Atr-MIR396j

Basic info.

• miRNA locus ID
• Atr-MIR396j

• miRNA locus accession
• PmiREN000246

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00244  33730  33871  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

GATT    -    TC   -C       A  C          A  G   A   A  GGC C      TC   GT
    TGAT GTTT  ATG  TTTTCAC GG TTTCTTGAAC TG TAC CAG CA   C TCTTCG  GAG  
    |||| ||||  |||  ||||||| || |||||||||| || ||| ||| ||   | ||||||  |||  T
    ACTA CAAA  TAC  AGAGGTG CC AAAGAACTTG AC ATG GTC GT   G AGAAGC  CTC  
TAAT    A    GA   AA       -  T          G  A   A   -  AGT T      -T   GG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]