Atr-MIR396k

Basic info.

• miRNA locus ID
• Atr-MIR396k

• miRNA locus accession
• PmiREN000247

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00488  2988  3125  -

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

 GATTTGA          -CTT       G    C      A  G       A  AGC    AT    TTA
        TGTTTTCATG    TCCATAG CTTT TTGAAC TG TATTCAG CG   CATC  CGAG   
        ||||||||||    ||||||| |||| |||||| || ||||||| ||   ||||  ||||    
        ACAAAGGTAC    AGGTGTC GAAA AACTTG AC ATGAGTT GT   GTAG  GCTC   
TAGTACTA          AAAT       -    T      G  A       -  AAT    AG    TTG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]