Atr-MIR396l

Basic info.

• miRNA locus ID
• Atr-MIR396l

• miRNA locus accession
• PmiREN000248

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold01070  2975  3112  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

 GATTTGA          -CTT       G    C      A  G       ACGA  C         TTA
        TGTTTTCATG    TCTACAG CTTT TTGAAC TG TATTCAG    GC ATCTTCGAG   
        ||||||||||    ||||||| |||| |||||| || |||||||    || |||||||||    
        ACAAAGGTAC    AGGTGTC GAAA AACTTG AC ATGAGTT    CG TAGAGGCTC   
TAGTACTA          AAAT       -    T      A  A       GTCA  -         TTG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]