Atr-MIR397a

Basic info.

• miRNA locus ID
• Atr-MIR397a

• miRNA locus accession
• PmiREN000254

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00016  5120362  5120463  -

• Comments
• A member of family MIR397

• Confidence level
• 

Secondary strurture and sequence

  GGGGA    A    TACA    C               A    CCCAAAA
       GAAA ACCA    CATC TTGAGTGCAGCGTTG TGAA       
       |||| ||||    |||| ||||||||||||||| ||||        
       CTTT TGGT    GTAG AACTCATGTCGCGAC ACTT       
TAATGTA    A    TTCC    T               G    TAATCCC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]