Atr-MIR397b

Basic info.

• miRNA locus ID
• Atr-MIR397b

• miRNA locus accession
• PmiREN000255

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00072  1231142  1231264  +

• Comments
• A member of family MIR397

• Confidence level
• 

Secondary strurture and sequence

 TAT     -AA      AA   C    A           G    C      ACCTAATTTT
    GAGGA   ACCAGA  CAT ATTG GTGCAGCGTTG TGAA CCCAAA          
    |||||   ||||||  ||| |||| ||||||||||| |||| ||||||          C
    CTCCT   TGGTTT  GTA TAAC CACGTCGCGAC GCTT GGGTTT          
GCAC     ATA      CC   T    C           G    T      GTTCTCTCTA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]