Atr-MIR398b

Basic info.

• miRNA locus ID
• Atr-MIR398b

• miRNA locus accession
• PmiREN000257

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00102  1185687  1185819  +

• Comments
• A member of family MIR398

• Confidence level
• 

Secondary strurture and sequence

  TAGAATGTGAAGTCCCAACATTA     A         A        C     ATG       TAA
                         GCGAC TGGGAACAC CAGGTATG ATACA   ATATGCA   
                         ||||| ||||||||| |||||||| |||||   |||||||   A
                         CGCTG ACCCTTGTG GTTCGTGC TGTGT   TGTACGT   
TATATATACCCGTCCGAGCCGTCCC     G         C        A     --G       TAT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]