Atr-MIR408

Basic info.

• miRNA locus ID
• Atr-MIR408

• miRNA locus accession
• PmiREN000259

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00045  1152310  1152435  -

• Comments
• A member of family MIR408

• Confidence level
• 

Secondary strurture and sequence

          AG  TTT      AGG      T  A  T A           T  T  C  AACTCA
     AGAGA  TG   GAGAGC   CAGGGA GA GC G GCATGGGAGGG CA GA CA      
     |||||  ||   ||||||   |||||| || || | ||||||||||| || || ||       
     TCTCT  AT   CTCTCG   GTCCCT CT CG C CGTACTCTTCC GT CT GT      
TTCTC     CT  TTC      ---      T  C  T A           T  T  C  CGTTCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]