Atr-MIR828

Basic info.

• miRNA locus ID
• Atr-MIR828

• miRNA locus accession
• PmiREN000265

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00009  8165616  8165755  +

• Comments
• A member of family MIR828

• Confidence level
• 

Secondary strurture and sequence

    TT     TC  AC   A   T      C          TC  ATCT    -    --T     -CATA  AG
      TCTCC  TG  TAA GTT CTTGCT AAATGAGTAT  CA    GCTT TCTC   CCCTA     CA  
      |||||  ||  ||| ||| |||||| ||||||||||  ||    |||| ||||   |||||     ||   
      GGAGG  AC  ATT CAA GAACGA TTTACTCATA  GT    CGGG AGAG   GGGGT     GT  
ATTATT     TC  --   C   C      C          GT  --CT    T    TAC     TTTTA  TC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]