Atr-MIR8580

Basic info.

• miRNA locus ID
• Atr-MIR8580

• miRNA locus accession
• PmiREN000289

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00003  1980855  1981013  -

• Comments
• A member of family MIR8580

• Confidence level
• 

Secondary strurture and sequence

            ATAT  ---- T  -            C  -    T  -       T    C  ---   TT  --   C  TT  ATGG
AATGAGGTTGCG    TC    T CA CCATCCATTTTA TT GGAC GT GTAGGTT GAAT GT   TTT  AA  GAC GT  CA    
||||||||||||    ||    | || |||||||||||| || |||| || ||||||| |||| ||   |||  ||  ||| ||  ||    A
CTTTATTCCAAC    GT    G GA GTGGTAGGTAAG AT AATC TG CACATCT AACT TG   TAG  AA  TTC TG  CA    
            ----  CAGT -  T            -  A    -  T       -    -  TGA   --  TT   -  --  CTGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]