Atr-MIRN29

Basic info.

• miRNA locus ID
• Atr-MIRN29

• miRNA locus accession
• PmiREN000318

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00085  1687641  1687872  -

• Comments
• A member of family MIRN29

• Confidence level
• 

Secondary strurture and sequence

                      CTTGAATATAAT      T   C  CC     AA    C TC    -  ATC    C  -TTCCATA    CCA    ATC    GTC   TGCATTGATATCTAAGAGTCT
              CTTTGAAG            TTGTTG AGA TG  TTGGC  GAGT G  TTAC CA   CCAC CA        GATC   ATCA   GGAC   ATC                     
              ||||||||            |||||| ||| ||  |||||  |||| |  |||| ||   |||| ||        ||||   ||||   ||||   |||                     C
              GAGATTTC            AACAAC TCT AC  AATCG  CTCA C  AATG GT   GGTG GT        CTAG   TAGT   CCTG   TCT                     
CTTCGTTTGAAATA        ------------      -   C  AC     -A    A TT    T  ---    A  TATAATGG    -TG    -AA    --A   AAGAGCCCAACTGCTACAATA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]