Atr-MIRN33

Basic info.

• miRNA locus ID
• Atr-MIRN33

• miRNA locus accession
• PmiREN000324

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00027  6034564  6034795  +

• Comments
• A member of family MIRN33

• Confidence level
• 

Secondary strurture and sequence

  CTA           C   C C               C        -------------T           -  CACAGATATCTAAAAAAATCAAGTCCCACACCATGTGATAACTTTTTTA
     TGAGACCCTCC ATA C ATGTGTGTAGGATTC AAAGGGTC              TCATTAAATTT GG                                                 
     ||||||||||| ||| | ||||||||||||||| ||||||||              ||||||||||| ||                                                  
     ACTCTGGGAGG TAT G TACACGTATTCTAAG TTTTCTAG              CTGGGAGGATA CG                                                 
TTTAA           A   A A               A        TGGTAATTTAAACT           T  ATGCACGTATTCTAAAATTTTCTAGTGGTAATTTAAACTCTGTCTAGAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]