Atr-MIRN38

Basic info.

• miRNA locus ID
• Atr-MIRN38

• miRNA locus accession
• PmiREN000332

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00102  1300312  1300544  +

• Comments
• A member of family MIRN38

• Confidence level
• 

Secondary strurture and sequence

   C    GGAC      ---GT   C       ---    A     TATTCC  TCATACCTTTGTTTTTTTTTCTCTTAGCCTTTGTTTGGCGAGCTGCTGCAAGTTTTCGATGAGATCTTT
    CCAA    TATGCT     TTT AATCAAA   TCGT GATGT      GG                                                                     
    ||||    ||||||     ||| |||||||   |||| |||||      ||                                                                      
    GGTT    GTACGA     AAA TTAGTTT   AGTA TTACG      AA                                                                     
GATA    ----      ATTAT   C       CCA    -     -TTATG  TAGAGTAGAAGAGTTAACAGTTTTAGAAAATAGCTCATTTAATCTTTAGATACAAAGATTTCGTCGTAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]