Atr-MIRN39

Basic info.

• miRNA locus ID
• Atr-MIRN39

• miRNA locus accession
• PmiREN000334

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00413  4539  4658  -

• Comments
• A member of family MIRN39

• Confidence level
• 

Secondary strurture and sequence

          ACTAACGG      GTGTTACA        T        C      C    G  C   T
                  AGCGCG        TTGTCGGA CGCTCTTA GCCATG CGGA CC CTG 
                  ||||||        |||||||| |||||||| |||||| |||| || ||| G
                  TCGTGC        AACAGCCT GCGGGAAT TGGTAT GCCT GG GAC 
GCTTTTACAGTAAGAGTA      --------        C        T      T    -  T   A

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]