Atr-MIRN42

Basic info.

• miRNA locus ID
• Atr-MIRN42

• miRNA locus accession
• PmiREN000340

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00002  350566  350822  +

• Comments
• A member of family MIRN42

• Confidence level
• 

Secondary strurture and sequence

              TTAAA    CCTTC  C            ---A   -      T TA    ATAAAATATATAAACTCT    CATCTTTTACAGGCATAGGAGCGTCCCTCACAGGAGCAACCAATTTGTGTAACGGC
                   ACAA     TC TGTTGGTTTTTA    GAT GTGTCC T  TGAT                  TGCC                                                        
                   ||||     || ||||||||||||    ||| |||||| |  ||||                  ||||                                                         
                   TGTT     AG ACGATTAAGAAT    CTA CATAGG A  ACTG                  TCTC                                                        
TAATAGTATATTTCTCTAA    -ATAT  T            AGTA   G      C GC    -----------------C    GTATCGGGAGAGTGTATTTACCCACGAGTAACCCGTTAGTGTAACGAGGAGTGTAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]