Atr-MIRN45

Basic info.

• miRNA locus ID
• Atr-MIRN45

• miRNA locus accession
• PmiREN000343

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00004  10530332  10530448  +

• Comments
• A member of family MIRN45

• Confidence level
• 

Secondary strurture and sequence

  ATAGA        -    ATA        -   CCAAG      AAG   --      TG
       AAATAGAA AGGT   GGCGGATG TAG     TGGATC   GCA  GTGGAT  
       |||||||| ||||   |||||||| |||     ||||||   |||  ||||||  T
       TTTATCTT TTCA   CCGCTTGC GTC     ACTTGG   CGT  CACCTA  
AACAACA        G    -GC        T   -CCTA      ACG   AC      AG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]