Atr-MIRN46

Basic info.

• miRNA locus ID
• Atr-MIRN46

• miRNA locus accession
• PmiREN000344

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00005  9075086  9075219  -

• Comments
• A member of family MIRN46

• Confidence level
• 

Secondary strurture and sequence

  NNNNNNNNNNCCATGGG       A   -AC       AA   -G   TT     --T      G   GG
                   TTGCCGT TGA   AGCAACC  AGT  CAG  CGATG   TGCTGG TTT  
                   ||||||| |||   |||||||  |||  |||  |||||   |||||| |||   
                   AATGGCA ACT   TCGTTGG  TCG  GTT  GTTGT   ACGACT AAA  
CGTGAATTTTCGGTTCATG       -   CAA       -G   AA   -T     TCC      -   GA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]