Atr-MIRN52

Basic info.

• miRNA locus ID
• Atr-MIRN52

• miRNA locus accession
• PmiREN000355

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00023  3538382  3538524  -

• Comments
• A member of family MIRN52

• Confidence level
• 

Secondary strurture and sequence

  CAAACTTTTCACAA AT      TAC            T   CT  GA   AA  A  TT  ATA    GT
                G  CAACTT   TCAATTCCAATA CTT  AT  GGG  GT GG  TC   CGAA  
                |  ||||||   |||||||||||| |||  ||  |||  || ||  ||   ||||   
                C  GTTGGA   GGTTAAGGTTGT GAA  TG  CCT  CA CC  AG   GCTT  
CTAAAGCACTAGATGA GG      TAA            C   CC  AG   AG  A  CT  -CA    TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]