Atr-MIRN56

Basic info.

• miRNA locus ID
• Atr-MIRN56

• miRNA locus accession
• PmiREN000360

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00034  3961812  3962073  +

• Comments
• A member of family MIRN56

• Confidence level
• 

Secondary strurture and sequence

ATCTTTGCTTTGC    AAAC    C             CTCAAACTC  C      ----   TCACCTT ----     GACC -- AGCTGTATATATGTGCATTCATGCCCTATCTTTTATATATATGGAAAAAGTTGAGG
             TTCG    AAAA AATTAGAATTAGG         AG GGTAGA    GTG       C    ACATG    A  C                                                        
             ||||    |||| |||||||||||||         || ||||||    |||       |    |||||    |  |                                                        T
             AAGT    TTTT TTAATTTTAATTT         TA TGCTTT    CAG       C    CCAAT    C  G                                                        
            A    AACT    T             ---------  -      ACTC   ------- GCTG     ---- TA CCGGGTATAAGTAATACCCGGCAACCCGAGTATACAACTATACTCGATCACCCGAT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]